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bio-pathway-wikipathways

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WikiPathways enrichment using clusterProfiler and rWikiPathways. Use when analyzing gene lists against community-curated open-source pathways. Performs over-representation analysis and GSEA for 30+ species.

When to use

• WikiPathways enrichment
• over-representation analysis
• GSEA on WikiPathways
• querying WikiPathways database
• custom GMT-based analysis
• comparing clusters
• visualization of enrichment results

Skill page

Source