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bio-rna-quantification-tximport-workflow

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Import transcript-level quantifications from Salmon, kallisto, or other tools into R for gene-level analysis using tximport or tximeta. Use when importing transcript counts into R for DESeq2 or edgeR.

When to use

• Importing transcript counts into R
• Gene-level differential expression analysis
• Using tximport or tximeta
• Creating tx2gene mappings
• Summarizing transcripts to gene level
• Handling version numbers in transcript IDs

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