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tcga-preprocessing

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Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.

When to use

• ingesting TCGA sample sheets
• loading expression archives
• loading clinical carts
• initialising survival metadata
• exporting annotated AnnData files
• running survival analyses
• generating raw and normalised matrices

Skill page

Source