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tellurium

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Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter perturbations, and exports and replays SBML plus SED-ML COMBINE archives. Use for reaction-network time courses, kinetic parameters, concentration dynamics and reproducible simulation experiments; steady-state constraint-based metabolic flux analysis belongs to cobrapy.

When to use

• Use this skill for deterministic reaction-network trajectories and independent parameter conditions from a local model. The helper performs SBML consistency checks, CVODE integration and an actual COMBINE archive replay. It exports each co…

When not to use

• steady-state constraint-based metabolic flux analysis
• flux-balance reconstruction
• rate-rule models
• zero-dimensional compartments
• amount-only selections
• time-varying inputs
• changes to species initial values
• changes to compartment volume

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