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bio-comparative-genomics-synteny-analysis

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Analyze genome collinearity and syntenic blocks using MCScanX, SyRI, and JCVI for comparative genomics. Detect conserved gene order, chromosomal rearrangements, and whole-genome duplications.

When to use

• comparing genome structure between species
• identifying conserved genomic regions
• detecting conserved gene order
• detecting chromosomal rearrangements
• detecting whole-genome duplications
• analyzing genome collinearity
• identifying syntenic blocks

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