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bio-variant-calling-structural-variant-calling

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Call structural variants (SVs) from short-read sequencing using Manta, Delly, and LUMPY. Detects deletions, insertions, inversions, duplications, and translocations that are too large for standard SNV callers. Use when detecting structural variants from short-read data.

When to use

• Detecting structural variants from short-read data
• Detecting large genomic rearrangements
• Somatic SV calling
• WES mode SV calling
• RNA-seq mode SV calling
• Merging multiple caller callsets
• Filtering SV calls
• Annotating SVs

When not to use

• Standard SNV calling

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