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bio-longread-structural-variants

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Detect structural variants from long-read alignments using Sniffles, cuteSV, and SVIM. Use when detecting deletions, insertions, inversions, translocations, or complex rearrangements from ONT or PacBio data, especially those missed by short-read methods.

When to use

• Detecting deletions
• Detecting insertions
• Detecting inversions
• Detecting translocations
• Detecting complex rearrangements
• Detecting duplications
• Population-level SV analysis
• Merging multiple SV callsets

When not to use

• Short-read SV comparison

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