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bio-metagenomics-strain-tracking

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Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.

When to use

• Track bacterial strains
• Compare genomes
• Detect contamination
• Monitor strain-level variation
• Outbreak tracking
• Transmission analysis
• Within-host strain dynamics
• Sub-species resolution

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