domains / families / science / bio-spatial-transcriptomics-spatial-visualization

bio-spatial-transcriptomics-spatial-visualization

separate

Visualize spatial transcriptomics data using Squidpy and Scanpy. Create tissue plots with gene expression, clusters, and annotations overlaid on histology images. Use when visualizing spatial expression patterns.

When to use

• visualizing spatial expression patterns
• plot gene expression on tissue section
• overlay gene expression, cluster assignments, or continuous scores on spatial coordinates
• create visualizations for spatial transcriptomics data
• visualize co-localization of two genes
• explore spatial data interactively with zoomable tissue images
• export high-resolution figures

Skill page

Source