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bio-spatial-transcriptomics-spatial-neighbors

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Build spatial neighbor graphs for spatial transcriptomics data using Squidpy. Compute k-nearest neighbors, Delaunay triangulation, and radius-based connectivity for downstream spatial analyses. Use when building spatial neighborhood graphs.

When to use

• Build spatial neighborhood graphs
• Compute k-nearest neighbors
• Delaunay triangulation
• Radius-based connectivity
• Visium grid structure neighbors
• Combine spatial and expression neighbors
• Visualize neighbor graph
• Compute graph statistics

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