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bio-spatial-transcriptomics-image-analysis

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Process and analyze tissue images from spatial transcriptomics data using Squidpy. Extract image features, segment cells/nuclei, and compute morphological features from H&E or IF images. Use when processing tissue images for spatial transcriptomics.

When to use

• Extract image features
• Segment cells/nuclei
• Compute morphological features
• Process H&E images
• Process IF images
• Color deconvolution
• Extract spot image crops

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