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bio-spatial-transcriptomics-spatial-domains

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Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy. Cluster spots considering both expression and spatial context to define anatomical regions. Use when identifying tissue domains or spatial regions.

When to use

• Identify tissue domains
• Identify spatial regions
• Cluster spots considering expression and spatial context
• Define anatomical regions
• Spatial domain detection
• Evaluate domain quality
• Refine domain boundaries

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