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bio-spatial-transcriptomics-spatial-deconvolution

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Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.

When to use

• Estimating cell type composition in spatial spots
• Deconvolving Visium spots into cell types
• Mapping single-cell reference data to spatial locations
• Inferring cell type proportions from scRNA-seq references

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