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bio-spatial-transcriptomics-spatial-data-io

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Load spatial transcriptomics data from Visium, Xenium, MERFISH, Slide-seq, and other platforms using Squidpy and SpatialData. Read Space Ranger outputs, convert formats, and access spatial coordinates. Use when loading Visium, Xenium, MERFISH, or other spatial data.

When to use

• Load Visium spatial data
• Load Xenium data
• Load MERFISH data
• Load Slide-seq data
• Load Nanostring CosMx
• Load Stereo-seq data
• Create Spatial AnnData from scratch
• Access spatial coordinates

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