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spatial-transcriptomics-analysis

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Automated analysis pipeline for Spatial Transcriptomics (Visium, Xenium) integrating histology and gene expression.

When to use

• Visium dataset processing
• Xenium dataset processing
• Identifying spatially variable genes
• Generating spatial feature plots
• Spatial QC and preprocessing
• Cell type deconvolution
• Overlaying gene expression on tissue images

Skill page

Source