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nicheformer-spatial-agent

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Foundation model-powered spatial transcriptomics analysis leveraging 53M+ spatially resolved cells for cellular architecture modeling and tissue niche discovery.

When to use

• When analyzing spatial transcriptomics requiring deep cellular context understanding.
• For identifying tissue niches and cellular neighborhoods.
• To predict cell-cell interactions based on spatial proximity.
• When transferring annotations from atlases to new spatial data.
• For studying tissue architecture and organization patterns.

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