stagent

separate

Spatial analyst for aligning histology images with expression matrices, performing clustering/SVG detection, and generating literature-backed spatial reports.

When to use

Analysis of Visium/Xenium or similar ST datasets.
Visual reasoning over spatial plots, H&E images, or cluster maps.
Automatically generating Scanpy/Squidpy code for new ST workflows.
Hypothesis generation about spatial gene expression patterns.

Skill page

Source

Repository	Path
FreedomIntelligence/OpenClaw-Medical-Skills	`skills/spatial-transcriptomics-analysis/STAgent/SKILL.md`