domains / families / science / bio-workflows-spatial-pipeline

bio-workflows-spatial-pipeline

separate

End-to-end spatial transcriptomics workflow for Visium/Xenium data covering data loading, preprocessing, spatial analysis, domain detection, and visualization with Squidpy.

When to use

• analyzing spatial transcriptomics data
• Visium data analysis
• Xenium data analysis
• spatial domain detection
• spatial visualization

Skill page

Source