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bio-spatial-transcriptomics-spatial-statistics

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Compute spatial statistics for spatial transcriptomics data using Squidpy. Calculate Moran's I, Geary's C, spatial autocorrelation, co-occurrence analysis, and neighborhood enrichment. Use when computing spatial autocorrelation or co-occurrence statistics.

When to use

• computing spatial autocorrelation
• computing co-occurrence statistics
• identifying spatially variable features
• testing neighborhood enrichment
• computing Ripley's statistics
• computing centrality scores
• building interaction matrices
• computing Local Moran's I (LISA)

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