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spatial-epigenomics-agent

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AI-powered spatial epigenomics analysis combining chromatin accessibility, histone modifications, and DNA methylation with spatial coordinates for tissue architecture mapping.

When to use

• When analyzing spatial ATAC-seq data (Slide-seq + ATAC, DBiT-seq).
• To map chromatin accessibility across tissue microenvironments.
• For spatial profiling of histone modifications (H3K27ac, H3K4me3, H3K27me3).
• When integrating spatial epigenomics with spatial transcriptomics.
• To identify spatially-variable regulatory elements and enhancers.

When not to use

• non-spatial epigenomics

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