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bio-workflow-management-snakemake-workflows

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Build reproducible bioinformatics pipelines with Snakemake using rules, wildcards, and automatic dependency resolution. Use when creating Python-based workflows, automating multi-step analyses with make-like dependency tracking, or running pipelines on HPC clusters with SLURM.

When to use

• creating Python-based workflows
• automating multi-step analyses
• make-like dependency tracking
• running pipelines on HPC clusters with SLURM
• using rules, wildcards, and automatic dependency resolution

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