domains / families / science / scrna-qc

scrna-qc

separate

Execute the MAD-based single-cell RNA-seq QC workflow to filter low-quality cells and emit reports plus filtered AnnData files.

When to use

• filter low-quality cells
• compute metrics
• apply MAD thresholds
• generate standard plots
• filter genes
• emit qc_summary.json

When not to use

• doublet handling
• batch correction

Skill page

Source