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scrna-orchestrator

separate

Local Scanpy pipeline for single-cell RNA-seq QC, clustering, marker discovery, and optional two-group differential expression from raw-count .h5ad.

When to use

• single-cell RNA-seq QC
• clustering
• marker discovery
• two-group differential expression
• UMAP visualization
• Leiden clustering
• Wilcoxon marker detection
• DE volcano plot

When not to use

• processed/normalized/scaled .h5ad inputs
• pbmc3k_processed-style inputs

Skill page

Source