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bio-single-cell-markers-annotation

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Find marker genes and annotate cell types in single-cell RNA-seq using Seurat (R) and Scanpy (Python). Use for differential expression between clusters, identifying cluster-specific markers, scoring gene sets, and assigning cell type labels. Use when finding marker genes and annotating clusters.

When to use

• differential expression between clusters
• identifying cluster-specific markers
• scoring gene sets
• assigning cell type labels
• finding marker genes
• annotating clusters
• visualizing markers
• cell cycle scoring

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