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scfoundation-model-agent

separate

Unified agent for leveraging single-cell foundation models (scGPT, scBERT, Geneformer, scFoundation) for cross-species annotation, perturbation prediction, and gene network inference.

When to use

• When annotating cell types across species (human, mouse, cross-species).
• For predicting perturbation effects (knockouts, drug treatments) in silico.
• To infer gene regulatory networks from single-cell data.
• When integrating batches without losing biological signal.
• For generating cell embeddings for downstream analysis.

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