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single-clustering

separate

Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_single_batch.ipynb.

When to use

• preprocess an AnnData object
• explore clustering alternatives
• evaluate or harmonise batches
• run quality control
• select features
• construct neighbourhood graph
• perform batch correction
• benchmark integration performance

Skill page

Source