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sequence-statistics

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Calculate assembly and sequence statistics (N50/L50, auN, NG50/NGA50, length distribution, GC content with ambiguity handling, summary reports) using Biopython. Use when analyzing sequence datasets, generating QC reports, or comparing genome assemblies.

When to use

• analyzing sequence datasets
• generating QC reports
• comparing genome assemblies
• calculating N50 and L50
• calculating auN
• calculating NG50 and NGA50
• calculating length distribution
• calculating GC content

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