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paired-end-fastq

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Handle paired-end FASTQ files (R1/R2) using Biopython while keeping mates synchronized. Use when working with Illumina paired reads, synchronizing pairs, filtering both mates together with orphan routing, interleaving/deinterleaving, or matching mates by read name.

When to use

• working with Illumina paired reads
• synchronizing pairs
• filtering both mates together with orphan routing
• interleaving/deinterleaving
• matching mates by read name

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