domains / families / science / tamarind

tamarind

separate

Provides access to a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molecular dynamics. Use when the user mentions Tamarind or tamarind.bio, wants to run any of these open-source tools in the cloud, references app.tamarind.bio/api or the x-api-key header, or needs to submit batches of sequences for structural or biophysical characterization.

When to use

• protein structure prediction
• protein, binder, and de novo design
• antibody and nanobody design
• protein-ligand docking
• binding-affinity prediction
• MSA generation
• molecular dynamics
• submitting batches of sequences for structural or biophysical characterization

When not to use

• local sequence processing
• molecular descriptors

Skill page

Source