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bio-workflows-rnaseq-to-de

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End-to-end RNA-seq workflow from FASTQ files to differential expression results. Covers QC, quantification (Salmon or STAR+featureCounts), and DESeq2 analysis with visualization.

When to use

• RNA-seq from FASTQ to DE results
• QC and trimming with fastp
• Quantification with Salmon or STAR+featureCounts
• DESeq2 analysis
• Visualization of DE results

Skill page

Source