domains / families / science / orf-detection

orf-detection

separate

Detect and quantify translated ORFs from Ribo-seq using 3-nucleotide periodicity, including uORFs, internal ORFs, dORFs, and novel ORFs. Use when finding actively translated regions beyond annotated CDS, classifying ORFs by the 2022 community standard, quantifying ORF-level translation, or choosing between periodicity-based callers.

When to use

• Detecting translated ORFs from Ribo-seq
• Identifying uORFs, internal ORFs, dORFs, and novel ORFs
• Classifying ORFs by the 2022 community standard
• Quantifying ORF-level translation
• Choosing between periodicity-based callers
• Finding actively translated regions beyond annotated CDS

When not to use

• Tasks not stated in the skill text

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