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bio-phasing-imputation-reference-panels

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Download, prepare, and manage reference panels for phasing and imputation. Covers 1000 Genomes, HRC, and TOPMed panels.

When to use

• setting up imputation infrastructure
• selecting appropriate reference panels for target populations
• downloading 1000 Genomes Phase 3 panels
• downloading HRC reference panels
• downloading TOPMed reference panels
• converting reference panels to Beagle format
• converting reference panels to IMPUTE5 format
• filtering and merging reference panels

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