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bio-read-qc-fastp-workflow

separate

All-in-one read preprocessing with fastp including adapter trimming, quality filtering, deduplication, base correction, and HTML report generation. Use when preprocessing Illumina data and wanting a single fast tool instead of separate Cutadapt, Trimmomatic, and FastQC steps.

When to use

• adapter trimming
• quality filtering
• deduplication
• base correction
• HTML report generation
• preprocessing Illumina data
• single fast tool
• poly-X trimming

When not to use

• separate Cutadapt steps
• separate Trimmomatic steps
• separate FastQC steps

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