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bio-read-qc-adapter-trimming

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Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. Supports single-end and paired-end reads, Illumina TruSeq, Nextera, and custom adapter sequences. Use when FastQC shows adapter contamination or before alignment of short reads.

When to use

• Remove sequencing adapters from FASTQ files
• Single-end read adapter trimming
• Paired-end read adapter trimming
• Illumina TruSeq adapter removal
• Nextera adapter removal
• Custom adapter sequence trimming
• FastQC adapter contamination resolution
• Pre-alignment short read processing

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