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bio-workflows-proteomics-pipeline

separate

End-to-end proteomics workflow from MaxQuant output to differential protein abundance. Orchestrates data import, normalization, imputation, and statistical testing with MSstats or limma.

When to use

• processing mass spectrometry proteomics
• data import and filtering
• log2 transform and normalization
• missing value imputation
• QC: PCA, Correlation
• differential abundance analysis
• visualization and export

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Source