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bio-population-genetics-plink-basics

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PLINK file formats, format conversion, and quality control filtering for population genetics. Convert between VCF, BED/BIM/FAM, and PED/MAP formats, apply MAF, genotyping rate, and HWE filters using PLINK 1.9 and 2.0.

When to use

• PLINK file formats
• format conversion
• quality control filtering
• population genetics
• VCF to PLINK conversion
• PLINK to VCF conversion
• MAF filtering
• HWE filtering

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