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bio-phylo-tree-manipulation

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Modify phylogenetic tree structure using Biopython Bio.Phylo. Use when rooting trees with outgroups or midpoint, pruning taxa, collapsing clades, ladderizing branches, or extracting subtrees.

When to use

• rooting trees with outgroups
• rooting trees at midpoint
• pruning taxa
• collapsing clades
• ladderizing branches
• extracting subtrees
• tree traversal
• finding clades

Skill page

Source