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bio-chipseq-peak-calling

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ChIP-seq peak calling using MACS3 (or MACS2). Call narrow peaks for transcription factors or broad peaks for histone modifications. Supports input control, fragment size modeling, and various output formats including narrowPeak and broadPeak BED files. Use when calling peaks from ChIP-seq alignments.

When to use

• Calling narrow peaks for transcription factors
• Calling broad peaks for histone modifications
• Peak calling with input control
• Peak calling without input control
• Peak calling from paired-end data
• Peak calling from multiple replicates
• Peak calling for non-model organisms
• Generating signal tracks

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