domains / families / science / bio-pdb-structure-navigation

bio-pdb-structure-navigation

separate

Navigate protein structure hierarchy using Biopython Bio.PDB SMCRA model. Use when accessing models, chains, residues, and atoms, iterating over structure levels, or extracting sequences from PDB files.

When to use

• accessing models, chains, residues, and atoms
• iterating over structure levels
• extracting sequences from PDB files
• accessing atomic coordinates
• checking for children
• getting parent entity
• converting residue names
• using Selection.unfold_entities

Skill page

Source