domains / families / science / gokegg

gokegg

separate

Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart. NOT for single-cell RNA-seq, methylation data, or non-expression data.

When to use

• GO and KEGG enrichment from a gene list derived from bulk RNA-seq or microarray studies
• Supported gene ID types: `SYMBOL`, `ENSEMBL`, `ENTREZID`
• Supported species databases: `org.Hs.eg.db`, `org.Mm.eg.db`, `org.Rn.eg.db`
• Single-cell RNA-seq analysis
• Methylation, proteomics, or non-expression omics workflows
• Differential expression testing from raw count matrices

When not to use

• Single-cell RNA-seq analysis
• Methylation data
• Proteomics workflows
• Non-expression omics workflows
• Differential expression testing from raw count matrices

Skill page

Source