domains / families / science / omero-integration

omero-integration

combined

Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows. Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.

When to use

• Working with OMERO Python API (omero-py) to access microscopy data
• Retrieving images, datasets, projects, or screening data programmatically
• Analyzing pixel data and creating derived images
• Creating or managing ROIs (regions of interest) on microscopy images
• Adding annotations, tags, or metadata to OMERO objects
• Storing measurement results in OMERO tables
• Creating server-side scripts for batch processing
• Performing high-content screening analysis

Skill page

Conflict

The K-Dense copy is a hardened, version-pinned operating contract (Python 3.12, IcePy 3.6.5, omero-py 5.22.1, strict credential handling, dry-run-first, and explicit write-approval rules). The Vibe-Skills and OpenClaw copies are near-identical, broader capability catalogs that omit those safety constraints and use looser, older requirements (Python 3.7+, generic install). Because the K-Dense copy would hide the broader capability routing and the other copies would hide the critical safety/version constraints, crowning one would lose material steps.