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bio-atac-seq-nucleosome-positioning

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Extract nucleosome positions from ATAC-seq data using NucleoATAC, ATACseqQC, and fragment analysis. Use when analyzing chromatin organization, identifying nucleosome-free regions at promoters, or characterizing nucleosome occupancy patterns from ATAC-seq fragment size distributions.

When to use

• analyzing chromatin organization
• identifying nucleosome-free regions at promoters
• characterizing nucleosome occupancy patterns
• mapping nucleosome positions from ATAC-seq
• separating nucleosome-free and mono-nucleosome fragments
• calling nucleosome center positions
• calculating occupancy scores
• visualizing fragment size distribution

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