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ngs-analysis

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Next-generation sequencing data analysis pipelines including bulk RNA-seq, scRNA-seq preprocessing, variant calling, and quality control. Supports GEO/SRA data retrieval.

When to use

• bulk RNA-seq
• scRNA-seq preprocessing
• variant calling
• quality control
• FASTQ files
• alignment (STAR, BWA)
• quantification (featureCounts, Salmon)
• DESeq2/edgeR analysis

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