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bio-workflows-microbiome-pipeline

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End-to-end 16S amplicon workflow from FASTQ reads to differential abundance. Orchestrates DADA2 ASV inference, taxonomy assignment, diversity analysis, and compositional testing with ALDEx2.

When to use

• processing 16S/ITS amplicon data
• DADA2 ASV inference
• taxonomy assignment
• diversity analysis
• compositional testing with ALDEx2

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