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bio-workflows-methylation-pipeline

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End-to-end bisulfite sequencing workflow from FASTQ to differentially methylated regions. Covers Bismark alignment, methylation calling, and DMR detection with methylKit.

When to use

• analyzing bisulfite sequencing data
• Bismark alignment
• methylation calling
• DMR detection with methylKit
• QC and trimming of FASTQ files
• deduplication of Bismark alignments
• differential methylation analysis

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