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bio-metagenomics-metaphlan

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Marker gene-based taxonomic profiling using MetaPhlAn 4. Provides accurate species-level relative abundances using clade-specific markers. Use when accurate taxonomic profiling is needed and computational resources are limited, or for comparison with HMP/other MetaPhlAn studies.

When to use

• accurate taxonomic profiling
• species-level relative abundances
• comparison with HMP/other MetaPhlAn studies
• limited computational resources
• shotgun metagenomic reads profiling
• clade-specific marker gene alignment
• long-read support
• strain-level genomic bins extraction

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