domains / families / science / bio-imaging-mass-cytometry-spatial-analysis

bio-imaging-mass-cytometry-spatial-analysis

separate

Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when analyzing spatial relationships between cell types, testing for neighborhood enrichment, or identifying cell-cell interaction patterns in imaging mass cytometry data.

When to use

• analyzing spatial relationships between cell types
• testing for neighborhood enrichment
• identifying cell-cell interaction patterns
• building spatial neighborhood graphs
• co-occurrence analysis
• Ripley's statistics
• spatial clustering
• finding interaction hotspots

Skill page

Source