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bio-workflows-longread-sv-pipeline

separate

End-to-end workflow for detecting structural variants from long-read sequencing data. Covers ONT/PacBio alignment with minimap2 and SV calling with Sniffles or cuteSV.

When to use

• detecting structural variants from long reads
• ONT/PacBio alignment with minimap2
• SV calling with Sniffles or cuteSV
• multi-sample SV calling
• filtering SVs with bcftools
• annotating SVs with AnnotSV

Skill page

Source