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bio-longread-alignment

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Align long reads using minimap2 for Oxford Nanopore and PacBio data. Supports various presets for different read types and applications. Use when aligning ONT or PacBio reads to a reference genome for variant calling, SV detection, or coverage analysis.

When to use

• Aligning ONT reads to a reference genome
• Aligning PacBio reads to a reference genome
• Variant calling
• SV detection
• Coverage analysis
• Splice-aware alignment
• Assembly to reference alignment

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