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bio-genome-assembly-long-read-assembly

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De novo genome assembly from Oxford Nanopore or PacBio long reads using Flye and Canu. Produces highly contiguous assemblies suitable for complete bacterial genomes and resolving complex regions.

When to use

• Assembling genomes from ONT reads
• Assembling genomes from PacBio reads
• Bacterial genome assembly
• Metagenome assembly
• Plasmid recovery
• Draft assemblies with Wtdbg2

When not to use

• PacBio HiFi data assembly using hifiasm

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